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Soil characteristics and microbial responses in post-mine reclamation areas in a typical resource-based city, China

    Min Tan Affiliation
    ; Xu Zhou Affiliation
    ; Gang Li Affiliation
    ; Mengyu Ge Affiliation
    ; Zhuang Chen Affiliation
    ; Junfeng Qu Affiliation

Abstract

Mining activities worldwide have resulted in soil nutrient loss, which pose risks to crop and environmental health. We investigated the effects of post-mine reclamation activities on soil physicochemical properties and microbial communities based on 16S rRNA sequencing and the further statistical analysis in the coal base in Peixian city, China. The results revealed significant differences in soil microbial relative abundance between reclamation and reference soils. Proteobacteria was the most abundant phyla in all seven mine sites regardless of reclamation age while considerable differences were found in microbial community structure at other levels among different sites. Notebly, Gammaproteobacteria, member of the phylum Proteobacteria, had relatively high abundance in most sites. Furthermore, Kendall’s tau-b correlation heatmap revealed that potentially toxic elements and other physicochemical properties play vital roles in microbial community composition.

Keyword : reclamation, mine soil, time series, physicochemical properties, community diversity, microbial community

How to Cite
Tan, M., Zhou, X., Li, G., Ge, M., Chen, Z., & Qu, J. (2021). Soil characteristics and microbial responses in post-mine reclamation areas in a typical resource-based city, China. Journal of Environmental Engineering and Landscape Management, 29(3), 273-286. https://doi.org/10.3846/jeelm.2021.15138
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Sep 9, 2021
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This work is licensed under a Creative Commons Attribution 4.0 International License.

References

Åkerblom, S., Bååth, E., & Bringmark, B. E. (2007). Experimentally induced effects of heavy metal on microbial activity and community structure of forest mor layers. Biology and Fertility of Soils, 44(1), 79–91. https://doi.org/10.1007/s00374-007-0181-2

Amato, M., & Ladd, J. N. (1994). Application of the ninhydrinreactive N assay for microbial biomass in acid soils. Soil Biology and Biochemistry, 26(9), 1109–1115. https://doi.org/10.1016/0038-0717(94)90132-5

Anderson, J. P. E., & Domsch, K. H. (1980). Quantities of plant nutrients in the microbial biomass of selected soils. Soil Science, 130(4), 211–216. https://doi.org/10.1097/00010694-198010000-00008

Bier, R. L., Voss, K. A., & Bernhardt, E. S. (2015). Bacterial community responses to a gradient of alkaline mountaintop mine drainage in Central Appalachian streams. ISME Journal, 9(6), 1378–1390. https://doi.org/10.1038/ismej.2014.222

Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Pena, A. G., Good rich, J. K., Gordon, J. I., Huttley, G. A., Kelley, S. T., Knights, D., Koenig, J. E., Ley, R. E., Lozupone, C. A., McDonald, D., Muegge, B. D., Pirrung, M., Reeder, J., Sevinsky, J. R., Tumbaugh, P. J., Walters, W. A., Widmann, J., Yatsunenko, T., Zaneveld, J., & Knight, R. (2010). QIIME allows analysis of high-throughput community sequencing data. Nature Methods, 7(5), 335–336. https://doi.org/10.1038/nmeth.f.303

Chao, A., & Bunge, J. (2002). Estimating the number of species in a Stochastic abundance model. Biometrics, 58(3), 531–539. https://doi.org/10.1111/j.0006-341X.2002.00531.x

Chen, Z., Wang, H., Liu, X., Zhao, X., & Li, C. (2017). Changes in soil microbial community and organic carbon fractions under short-term straw return in a rice–wheat cropping system. Soil and Tillage Research, 165, 121–127. https://doi.org/10.1016/j.still.2016.07.018

Cheng, Z., Zhang, F., Gale, W. J., Wang, W., Sang, W., & Yang, H. (2018). Effects of reclamation years on composition and diversity of soil bacterial communities in Northwest China. Canadian Journal of Microbiology, 64(1), 28–40. https://doi.org/10.1139/cjm-2017-0362

China Ministry of Ecology and Environment. (2018). Chinese soil environmental quality: Risk control standard for soil contamination of agricultural land (GB 15618-2018). China Environmental Science Press (in Chinese).

Clough, A., & Skjemstad, J. O. (2000). Physical and chemical protection of soil organic carbon in three agricultural soils with different contents of calcium carbonate. Australian Journal of Soil Research, 38(5), 1005–1016. https://doi.org/10.1071/sr99102

Cong, P., Wang, J., Li, Y., Liu, N., & Gao, Z. (2020). Changes in soil organic carbon and microbial community under varying straw incorporation strategies. Soil and Tillage Research, 204, 104735. https://doi.org/10.1016/j.still.2020.104735

Congyan, W., Kun, J., Jiawei, Z., Jun, L., & Bingde, W. (2018). Responses of soil N-fixing bacterial communities to redroot pigweed (Amaranthus retroflexus L.) invasion under Cu and Cd heavy metal soil pollution. Agriculture Ecosystems and Environment, 267, 15–22. https://doi.org/10.1016/j.agee.2018.08.002

Deng, X., Zhan, Y., Wang, F., Ma, W., Ren, Z., Chen, X., Qin, F., Long, W., Zhu, Z., & Lv, X. (2016). Soil organic carbon of an intensively reclaimed region in China: Current status and carbon sequestration potential. Science of the Total Environment, 565, 539–546. https://doi.org/10.1016/j.scitotenv.2016.05.042

Edgar, R. C. (2010). Search and clustering orders of magnitude faster than BLAST. Bioinformatics, 26(19), 2460–2461. https://doi.org/10.1093/bioinformatics/btq461

Fierer, N., & Jackson, R. B. (2006). The diversity and biogeography of soil bacterial communities. Proceedings of the National Academy of Sciences of the United States of America, 103, 626–631. https://doi.org/10.1073/pnas.0507535103

Gorzelak, M., Mcammond, B. M., Hamme, J. D. V., Birnbaum, C., & Hart, M. (2020). Soil microbial communities in long-term soil storage for sand mine reclamation. Ecological Restoration, 38(1), 13–23. https://doi.org/10.3368/er.38.1.13

Jing, Z., Wang, J., Zhu, Y., & Feng, Y. (2018). Effects of land subsidence resulted from coal mining on soil nutrient distributions in a loess area of China. Journal of Cleaner Production, 177, 350–361. https://doi.org/10.1016/j.jclepro.2017.12.191

Kong, X., Li, C., Wang, P., Huang, G., Li, Z., & Han, Z. (2019). Soil pollution characteristics and microbial responses in a vertical profile with long-term tannery sludge contamination in Hebei, China. International Journal of Environmental Research and Public Health, 16(4), 563. https://doi.org/10.3390/ijerph16040563

Kumar, P., Kumar, T., Singh, S., Tuteja, N., Prasad, R., & Singh, J. (2020). Potassium: A key modulator for cell homeostasis – ScienceDirect. Journal of Biotechnology, 324, 198–210. https://doi.org/10.1016/j.jbiotec.2020.10.018

Lauber, C. L., Hamady, M., Knight, R., & Fierer, N. (2009). Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Applied and Environmental Microbiology, 75(15), 5111–5120. https://doi.org/10.1128/aem.00335-09

Lauber, C. L., Strickland, M. S., Bradford, M. A., & Fierer, N. (2008). The influence of soil properties on the structure of bacterial and fungal communities across land-use types. Soil Biology and Biochemistry, 40(9), 2407–2415. https://doi.org/10.1016/j.soilbio.2008.05.021

Lewis, D. E., Chauhan, A., White, J. R., Overholt, W., Green, S. J., Jasrotia, P., Wafula, D., & Jagoe, C. (2012). Microbial and geochemical assessment of bauxitic un-mined and post-mined chronosequence soils from Mocho mountains, Jamaica. Microbial Ecology, 64(3), 738–749. https://doi.org/10.1007/s00248-012-0020-3

Li, C., Quan, Q., Gan, Y., Dong, J., Fang, J., Wang, L. & Liu, J. (2020). Effects of heavy metals on microbial communities in sediments and establishment of bioindicators based on microbial taxa and function for environmental monitoring and management. Science of the Total Environment, 749, 141555. https://doi.org/10.1016/j.scitotenv.2020.141555

Li, H., Han, X., You, M., & Xing, B. (2015a). Organic matter associated with soil aggregate fractions of a black soil in northeast china: impacts of land-use change and long-term fertilization. Communications in Soil Science and Plant Analysis, 46(4), 405–423. https://doi.org/10.1080/00103624.2014.956887

Li, Y., Chen, L., & Wen, H. (2015b). Changes in the composition and diversity of bacterial communities 13 years after soil reclamation of abandoned mine land in eastern China. Ecological Research, 30(2), 357–366. https://doi.org/10.1007/s11284-014-1230-6

Li, Y., Chen, L., Wen, H., Zhou, T., Zhang, T., & Gao, X. (2014). 454 pyrosequencing analysis of bacterial diversity revealed by a comparative study of soils from mining subsidence and reclamation areas. Journal of Microbiology and Biotechnology, 24(3), 313–323. https://doi.org/10.4014/jmb.1309.09001

Liu, H., Wang, C., Xie, Y., Luo, Y., Sheng, M., Xu, F., & Xu, H. (2020). Ecological responses of soil microbial abundance and diversity to cadmium and soil properties in farmland around an enterprise-intensive region. Journal of Hazardous Materials, 392, 122478. https://doi.org/10.1016/j.jhazmat.2020.122476

Liu, X., Wang, Y., & Yan, S. (2018). Interferometric SAR time series analysis for ground subsidence of the abandoned mining area in north Peixian using sentinel-1A TOPS data. Journal of the Indian Society of Remote Sensing, 46(3), 451–461. https://doi.org/10.1007/s12524-017-0708-4

Mukhopadhyay, S., Maiti, S. K., & Masto, R. E. (2014). Development of mine soil quality index (MSQI) for evaluation of reclamation success: A chronosequence study. Ecological Engineering, 71, 10–20. https://doi.org/10.1016/j.ecoleng.2014.07.001

Mummey, D. L., Stahl, P. D., & Buyer, J. S. (2002). Soil microbiological properties 20 years after surface mine reclamation: spatial analysis of reclaimed and undisturbed sites. Soil Biology and Biochemistry, 34(11), 1717–1725. https://doi.org/10.1016/s0038-0717(02)00158-x

Pataki, D. E., Alig, R. J., Fung, A. S., Golubiewski, N. E., Kennedy, C. A., McPherson, E. G., Nowak, D. J., Pouyat, R. V., & Lankao, P. R. (2006). Urban ecosystems and the North American carbon cycle. Global Change Biology, 12(11), 2092–2102. https://doi.org/10.1111/j.1365-2486.2006.01242.x

Pulleman, M., & Tietema, A. (1999). Microbial C and N transformations during drying and rewetting of coniferous forest floor material. Soil Biology and Biochemistry, 31(2), 275–285. https://doi.org/10.1016/S0038-0717(98)00116-3

Qu, J. F., Hou, Y. L., Ge, M. Y., Wang, K., Liu, S., Zhang, S. L., Li, G., & Chen, F. (2017). Carbon dynamics of reclaimed coal mine soil under agricultural use: a chronosequence study in the Dongtan mining area, Shandong Province, China. Sustainability, 9(4), 629. https://doi.org/10.3390/su9040629

Qu, J. F., Tan, M., Hou, Y. L., Ge, M. Y., Wang, A. N., Wang, K., Shan, J. X., & Chen, F. (2018). Effects of the stability of reclaimed soil aggregates on organic carbon in coal mining subsidence areas. Applied Engineering in Agriculture, 34(5), 843–854. https://doi.org/10.13031/aea.12829

Quadros, P. D. D., Zhalnina, K., Davis-Richardson, A. G., Drew, J. C., Menezes, F. B., Camargo, F. A. D. O., & Triplett, E. W. (2016). Coal mining practices reduce the microbial biomass, richness and diversity of soil. Applied Soil Ecology, 98, 195–203. https://doi.org/10.1016/j.apsoil.2015.10.016

Rastogi, G., Osman, S., Vaishampayan, P. A., Andersen, G. L., Stetler, L. D., & Sani, R. K. (2010). Microbial diversity in uranium mining-impacted soils as revealed by high-density 16s microarray and clone library. Microbial Ecology, 59(1), 94–108. https://doi.org/10.1007/s00248-009-9598-5

Rosenfeld, C. E., James, B. R., & Santelli, C. M. (2018). Persistent bacterial and fungal community shifts exhibited in seleniumcontaminated reclaimed mine soils. Applied and Environmental Microbiology, 84(16), e01394–01318. https://doi.org/10.1128/AEM.01394-18

Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., Lesniewski, R. A., Oakley, B. B., Parks, D. H., Robinson, C. J., Sahl, J. W., Stres, B., Thallinger, G. G., Van Horn, D. J., & Weber, C. F. (2009). Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Applied And Environmental Microbiology, 75(23), 7537–7541. https://doi.org/10.1128/aem.01541-09

Sheoran, V., Sheoran, A. S., & Poonia, P. (2010). Soil reclamation of abandoned mine land by revegetation: a review. International Journal of Soil Sediment and Water, 3(2), 13. https://doi.org/10.2136/sssaj2008.0216

Shi, Y., Li, Y., Xiang, X., Sun, R., Yang, T., He, D., Zhang, K., Ni, Y., Zhu, Y.-G., Adams, J. M., & Chu, H. (2018). Spatial scale affects the relative role of stochasticity versus determinism in soil bacterial communities in wheat fields across the North China Plain. Microbiome, 6, 27. https://doi.org/10.1186/s40168-018-0409-4

Shrestha, R. K., & Lal, R. (2011). Changes in physical and chemical properties of soil after surface mining and reclamation. Geoderma, 161(3–4), 168–176. https://doi.org/10.1016/j.geoderma.2010.12.015

Shrestha, R. K., Lal, R., & Jacinthe, P.-A. (2009). Enhancing carbon and nitrogen sequestration in reclaimed soils through organic amendments and chiseling. Soil Science Society of America Journal, 73(3), 1004–1011. https://doi.org/10.2136/sssaj2008.0216

Thavamani, P., Samkumar, R. A., Satheesh, V., Subashchandrabose, S. R., & Megharaj, M. (2017). Microbes from mined sites: Harnessing their potential for reclamation of derelict mine sites. Environmental Pollution, 230, 495–505. https://doi.org/10.1016/j.envpol.2017.06.056

Ussiri, D. A. N., & Lai, R. (2008). Method for determining coal carbon in the reclaimed minesoils contaminated with coal. Soil Science Society of America Journal, 72(1), 231–237. https://doi.org/10.2136/sssaj2007.0047

Wang, J., Qin, Q., Hu, S., & Wu, K. (2015). A concrete material with waste coal gangue and fly ash used for farmland drainage in high groundwater level areas. Journal of Cleaner Production, 112, 631–638. https://doi.org/10.1016/j.jclepro.2015.07.138

Xiao, W., Hu, Z., Li, J., Zhang, H., & Hu, J. (2011). A study of land reclamation and ecological restoration in a resourceexhausted city – a case study of Huaibei in China. International Journal of Mining Reclamation and Environment, 25(4), 332–341. https://doi.org/10.1080/17480930.2011.608888

Xie, X., Pu, L., Zhu, M., Wu, T., & Wang, X. (2020). Effect of long-term reclamation on soil quality in agricultural reclaimed coastal saline soil, Eastern China. Journal of Soils and Sediments, 20(11), 3909–3920. https://doi.org/10.1007/s11368-020-02698-w

Yan, N., Marschner, P., Cao, W., Zuo, C., & Qin, W. (2015). Influence of salinity and water content on soil microorganisms. International Soil and Water Conservation Research, 3(4), 316–323. https://doi.org/10.1016/j.iswcr.2015.11.003

Yang, Y., Christakos, G., Guo, M., Xiao, L., & Huang, W. (2017). Space-time quantitative source apportionment of soil heavy metal concentration increments. Environmental Pollution, 223, 560–566. https://doi.org/10.1016/j.envpol.2017.01.058

Yarwood, S., Wick, A., Williams, M., & Daniels, W. L. (2015). Parent material and vegetation influence soil microbial community structure following 30-years of rock weathering and pedogenesis. Microbial Ecology, 69(2), 383–394. https://doi.org/10.1007/s00248-014-0523-1

Yeomans, J. C., & Bremner, J. M. (1988). A rapid and precise method for routine determination of organic carbon in soil. Communications in Soil Science and Plant Analysis, 19(13), 1467–1476. https://doi.org/10.1080/00103628809368027

Yuan, Y., Zhao, Z., Zhang, P., Chen, L., Hu, T., Niu, S., & Bai, Z. (2017). Soil organic carbon and nitrogen pools in reclaimed mine soils under forest and cropland ecosystems in the Loess Plateau, China. Ecological Engineering, 102, 137–144. https://doi.org/10.1016/j.ecoleng.2017.01.028

Zhang, C., & Kong, F. (2014). Isolation and identification of potassium-solubilizing bacteria from tobacco rhizospheric soil and their effect on tobacco plants. Applied Soil Ecology, 82(7), 18–25. https://doi.org/10.1016/j.apsoil.2014.05.002

Zhang, M.-M., Wang, N., Hu, Y.-B., & Sun, G.-Y. (2018). Changes in soil physicochemical properties and soil bacterial community in mulberry (Morus alba L.)/alfalfa (Medicago sativa L.) intercropping system. Microbiologyopen, 7(2), e0189781. https://doi.org/10.1002/mbo3.555

Zhang, Y., Cui, B., Xie, T., Wang, Q., & Yan, J. (2016). Gradient distribution patterns of rhizosphere bacteria associated with the coastal reclamation. Wetlands, 36, S69–S80. https://doi.org/10.1007/s13157-015-0719-2

Zhao, F. Z., Ren, C. J., Zhang, L., Han, X. H., & Wang, J. (2018). Changes in soil microbial community are linked to soil carbon fractions after afforestation. European Journal Of Soil Science, 69(2), 370–379. https://doi.org/10.1111/ejss.12525